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jidt
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364 Commits 5 Branches 6 Tags 65 MiB
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364 Commits

Author SHA1 Message Date
Joseph Lizier 13952302c1 Fixed links in README.md 2015-08-20 23:59:01 +10:00
Joseph Lizier 47eb1fc3ad Fixing links on README.md 2015-08-20 23:55:10 +10:00
Joseph Lizier 4ba8a48439 added under construction banner 
... while I'm getting the wiki up properly ...
 2015-08-19 23:51:40 +10:00
Joseph Lizier 779f5a1fe2 Created README.md 
created from the converted google code wiki front page
 2015-08-19 23:47:26 +10:00
joseph.lizier cb147feb75 Correcting readme for Schreiber TE demos 2015-07-19 17:29:43 +00:00
joseph.lizier 6ffe643439 Adding release notes to the readme file ready for release v1.3 2015-07-19 17:26:07 +00:00
joseph.lizier dbd1dcdd54 Fixing the bias correction on our experimental discrete-continuous KSG calculators 2015-07-19 17:19:59 +00:00
joseph.lizier adafad05a2 Updating tutorial slides as for ECAL, plus some minor updates to some figures and PDFs found while developing tutorial 2015-07-19 17:17:26 +00:00
joseph.lizier f23b0c6abb Adding MI Auto Analyser GUI, plus minor bug corrections to TE Auto Analyser GUI 2015-07-12 19:54:14 +00:00
joseph.lizier ed34c39660 Had to correct the auto analyser scripts for TE to call TE specifically again 2015-07-09 14:46:30 +00:00
joseph.lizier 6f8050d466 Making AutoAnalyser an abstract class with AutoAnalyserTE a child; this builds platform to allow an AutoAnalyserMI later 2015-07-09 14:43:47 +00:00
joseph.lizier f6c8d26bf8 Minor fixes to default values of TE calculator properties, and adding error messages for array file reading 2015-07-09 14:38:23 +00:00
joseph.lizier 1aa9def942 Renaming scripts to run auto generated code (in preparation for extending auto generation to MI as well as TE) 2015-07-09 14:13:58 +00:00
joseph.lizier bbbc835c1f Correcting method of deleting auto-generated AutoAnalysis files in ant clean target 2015-07-07 15:03:15 +00:00
joseph.lizier 4f88161873 Deleting auto generated AutoAnalysis files in the ant clean target 2015-07-07 14:58:01 +00:00
joseph.lizier 3f3c737ddd Updating PDFs of Demos for next release. Also updated Schreiber TE demo to add section about auto-embedding. And updated release notes and svn number in build file. 2015-07-07 14:51:04 +00:00
joseph.lizier 2974916948 Extended AutoAnalyser GUI demo to work with discrete TE calculator as well. Also added a sample discrete data set 2015-07-03 13:01:38 +00:00
joseph.lizier d4af4f127e Updating demos readme PDF, adding readme for AutoAnalyser (this now is the final step such that it fixes Issue 41), and updating the readme about the new demo 2015-07-02 13:57:30 +00:00
joseph.lizier 4c587e51d9 Updating image of AutoAnalyser GUI app before calculation for wiki page (to include some tooltiptext) 2015-07-02 13:46:45 +00:00
joseph.lizier a1eb606f12 Adding image of AutoAnalyser GUI app after calculation for wiki page 2015-07-02 13:29:02 +00:00
joseph.lizier 4e00f96647 Adding image of AutoAnalyser GUI app for wiki page 2015-07-02 13:16:40 +00:00
joseph.lizier 745aa5f20f Finalising move of AutoAnalyser up to the top of demos level, including changing paths in the java file for the demo 2015-07-01 14:28:12 +00:00
joseph.lizier f4c5591cd2 Moving files to the new AutoAnalyser demo location 2015-07-01 14:06:16 +00:00
joseph.lizier 75fca70768 Gold plating the AutoAnalyser demo to have comments in generated code, JIDT image, tool tip text for properties, etc. 2015-07-01 13:46:31 +00:00
joseph.lizier 3d4765ea6b Matlab and Python code generation added to the AutoAnalyser GUI 2015-06-29 06:49:43 +00:00
joseph.lizier 53a3cf129d First full working version of the TE Auto Analyser, including scripts to run auto generated Java code 2015-06-29 04:57:38 +00:00
joseph.lizier 6951f52f68 First version of TE Auto Analyser Java Swing GUI 2015-06-23 00:58:57 +00:00
joseph.lizier e727233bc0 Updating unit tests for small noise being default now in KSG calculators. (The update sets noise level to 0 wherever we are checking repeated calculations, or comparing to results from other toolkits). Verifies Issue 42 fix 2015-06-16 12:30:19 +00:00
joseph.lizier bb587fa345 Also allowing the KSG calculators noise property to be set to "false" to indicate 0 noise. 2015-06-16 12:27:56 +00:00
joseph.lizier c4fc334c3a Adds a small (1e-8) amount of noise to all data for the Kraskov calculations by default. Fixes Issue 42. 2015-06-16 12:01:41 +00:00
joseph.lizier 192ad12bb2 Updating python code to be compatible with both python 2 and 3. (Includes changing xrange -> range, and removing ";", as found by Michael Wibral) 2015-06-10 11:37:15 +00:00
joseph.lizier 2928dafa12 Adding new Java demo 9 for auto-embedding of Kraskov TE 2015-06-05 14:48:03 +00:00
joseph.lizier a028fe4a4e Adding getProperty method to debug class so it compiles 2015-06-05 14:42:06 +00:00
joseph.lizier b45ada1d94 Added unit tests for Kraskov TE auto embedding via Ragwitz criteria -- verifies Issue 38. Also adds further tests for AIS auto embedding. 2015-06-05 06:51:23 +00:00
joseph.lizier 90fd9fbe89 Adding auto embedding via Ragwitz criteria for Kraskov Transfer Entropy calculator. This fixes Issue 38. 
Also patched AIS calculator to handle observations supplied with validity indicator when auto embedding is undertaken.
 2015-06-05 06:50:03 +00:00
joseph.lizier 8393429e26 Adding unit tests for AIS Kraskov for auto-embedding as part of partial fix for Issue 38 2015-06-04 13:59:31 +00:00
joseph.lizier 62228651bc Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38 2015-06-04 04:27:23 +00:00
joseph.lizier 687978103c Added auto-embedding with Ragwitz criteria to AIS Kraskov calculator, partially addressing Issue 38. Also adds getProperty() method to AIS calculators and MI calculators. 2015-06-04 03:48:55 +00:00
joseph.lizier 0f5bf692ac Adding PDFs of Wiki pages on using JIDT in non-Java environments, ready to be distributed. 2015-05-29 03:28:17 +00:00
joseph.lizier b4b94b1940 For Interregional Transfer demo, adding option for data files to be specified on command line 2015-05-28 02:43:34 +00:00
joseph.lizier d5d446660c Changing calls to sample() in R to use TRUE instead of "TRUE" (as per bug report to the jidt-discuss list) 2015-02-23 05:34:17 +00:00
joseph.lizier c09e7d4abd Updating release notes for v1.2.1 to point to correct revision number 2015-02-12 12:17:59 +00:00
joseph.lizier 51cc5b349d Adding release notes for v1.2.1 to tutorial 2015-02-12 12:16:03 +00:00
joseph.lizier eadcd55ca9 Updating tutorial slides to V1.1 of the tutorial 2015-02-12 11:02:05 +00:00
joseph.lizier 3e56f0385e Adding README PDF of the tutorial exercises 2015-02-09 00:10:32 +00:00
joseph.lizier af5f1264a0 Adding sample tutorial solutions, updating image for the web, and updating build file to include tutorials 2015-02-09 00:03:45 +00:00
joseph.lizier b07b6890ce Adding tutorial slides 2015-02-08 23:07:48 +00:00
joseph.lizier f0cbb61197 Fixing Javadoc commentsin MI calculators 2015-02-05 23:39:22 +00:00
joseph.lizier 1f4089f509 Making jar build target Java 6 2015-02-05 23:32:53 +00:00
joseph.lizier d5aa5c6aa8 Adding results for the tutorial for MI with lag on heart-breath interaction 2015-02-03 22:01:43 +00:00