10cc5f25bf
Adding image (for wiki) of AutoAnalyser Launcher
2017-11-26 18:12:53 +11:00
db0503d763
Having AutoAnalyser continue with the calculation where the generated code cannot be written
2017-11-26 18:04:29 +11:00
20e8fcef47
Fix of jar location for revised launchAutoAnalyser scripts
2017-11-26 01:18:08 +11:00
df8724b872
Altered AutoAnalyserLauncher to either auto-detect jar location or assume demos/AutoAnalyser folder is current location (if a command line argument is given). Similarly, altered AutoAnalyser to either take location of demos/AutoAnalyser folder, or assume it is the current folder.
2017-11-26 01:10:30 +11:00
fd804d0d0c
Added properties for running GPU calculation to MI AutoAnalyser
2017-11-26 01:07:19 +11:00
69af7252cd
Added debug print on working directory to AutoAnalyser startup
2017-11-25 00:15:37 +11:00
d09a9e804d
Patched location of jar file in the AutoAnalyser launcher scripts after having added the change directory to JIDT top level.
2017-11-24 22:00:28 +11:00
950ee70f9e
Fixing the individual AutoAnalyser shell script launchers to no longer need to compile the GUI app, nor to require the demo location to be on the path
2017-11-24 21:54:32 +11:00
4fe82359ff
Fixing launch location of where the AutoAnalyserLauncher GUI is run from by its launcher shell scripts (to be the JIDT root)
2017-11-24 21:53:21 +11:00
4881daadf2
Altering ant to reflect the new location of autoanalyser java files (now inside the main source tree), removing the autoanalyser target, as well as setting the Main-Class in the jar manifest (and making jar executable) so that on double click of the jar the AutoAnalyserLauncher is run. Also noticed that the debug build hadn't reverted back to Java 1.6 yet
2017-11-24 21:42:20 +11:00
326e5fbe77
AutoAnalyserLauncher shell scripts added (this is a new GUI to start all AutoAnalysers from, which was added two commits ago (but I forgot to comment in the message that it was added!)
2017-11-24 21:41:30 +11:00
7390c1d643
Altered build.xml to have consistent tabs for whitespace rather than mix of tabs and 2xSpace.
2017-11-24 21:08:02 +11:00
ddf3b4de0a
Moving AutoAnalyser java files into the main source location rather than in the demos location. This commit includes the moving of the files themselves. Further commits will alter the ant script and run scripts to have correct classpath, etc.
2017-11-24 21:07:33 +11:00
072ee35b37
Added generated java, python and matlab/octave files from the AutoAnalyser to .gitignore
2017-11-24 15:36:12 +11:00
142fbb4541
Merge branch 'master' of github.com:jlizier/jidt
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Merging in Pedro's mixed Kraskov changes, plus further work on GPU for Kraskov MI
2017-11-24 15:30:20 +11:00
e1212c0ce9
Added AutoAnalyserLauncher applet, a one-stop shop for launching an AutoAnalyser applet. Gives buttons to launch each one. This requires some minor changes to the super AutoAnalyser class (to allow constructor to specify offset of the working directory from the demos/AutoAnalyser directory) and child classes to allow the new constructors
2017-11-24 00:09:21 +11:00
8d0d0e23aa
Merge pull request #60 from pmediano/master
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Further improvements to GPU Kraskov MI.
2017-11-22 21:04:19 +11:00
9e77ebdadf
Tweak to method to print out an array of ints
2017-11-22 20:49:05 +11:00
1bb67f0840
Adding neighbour search utilities in preparation for attempting fast surrogate generation (performing multiple neighbour searches at once where we can); in particular adding a countPointsWithinR with a remapping of the point's indices. Unit test added as well for this.
2017-11-22 20:48:30 +11:00
446ac4ae59
Merge branch 'master' into gpu
2017-11-21 14:58:15 +00:00
86cd661a9c
Small clarification in build.xml comments.
2017-11-21 14:49:13 +00:00
decbcd5445
Small fix to GPU MI surrogate unit test.
2017-11-21 14:48:32 +00:00
c5c38335ef
Merge pull request #58 from pmediano/master
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Major improvements to KSG mixed (continuous-discrete) MI calculator.
2017-11-22 00:23:10 +11:00
ecda70f8e9
Hard-setting dynCorrExclTime to 0 in KSG mixed calc.
...
Previous implementation was incomplete due to a mismatch between the
sample indices in the full and marginal KdTrees. Some code has been left
to guide future development.
2017-11-20 14:47:00 +00:00
25df49fa5a
KSG mixed calc now allocates memory for locals only if requested.
2017-11-20 14:26:25 +00:00
8f169171e1
Fixed small bug in KSG mixed calc surrogates.
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Surrogate calculator was applying timeDiff twice, so surrogate
dataset had abs(timeDiff) less observations than it should.
2017-11-20 14:14:49 +00:00
d40024e1cd
Allow negative timeDiff in KSG mixed calc.
2017-11-20 14:02:00 +00:00
0c5bed62d6
Fixing tab/spaces mix in Python code for all combos for loops generated by AutoAnalyser calculators
2017-10-24 11:34:42 +11:00
6a48112818
In AutoAnalyser, limiting the use of variableCombinations to when we're actually making a calculation. (It chews up memory for large combinations, which makes AutoAnalyser take a long time even if we're not computing)
2017-09-06 13:51:34 +10:00
0e27dbcbc2
Fixed default value of dynamic exclusion window in Kernel MI calculator to be 0. Technically it is zero (because dynCorrExcl boolean is set to false, but gets reported as 100 because the integer value of dynCorrExclTime was not set to 0 itself)
2017-09-02 20:18:36 +10:00
8c7e94b0fa
Change build.xml file to revert back to Java 1.6
2017-08-31 16:28:44 +01:00
ed71502bc2
Remove old cudaLibraryLoad code and unnecessary dependencies.
2017-08-31 16:22:12 +01:00
83e77e8b3a
Merge Joe's master into Pedro's master with KSG mixed changes.
2017-08-30 17:36:32 +01:00
9b7d7c70c8
Add unittests for noise level and Theiler window in KSG mixed calc.
2017-08-30 13:31:13 +01:00
f56ac6e69e
Fix bug with Theiler window in KSG mixed calc.
2017-08-30 13:30:30 +01:00
5961fb6246
Add Theiler window and jitter to KSG mixed calc.
2017-08-30 12:17:02 +01:00
9aea9c4a02
Added some tests for KSG mixed setProperty.
2017-08-30 09:14:56 +01:00
d36c803e41
Added utilities to convert between estimate values and p-values for an analytic null distribution in bulk (array calls)
2017-08-30 16:24:17 +10:00
257ef285d3
Added a Matlab utility function to save CA data in a (relatively) efficient data format, since Matlab will only save doubles for ascii format.
2017-08-30 15:39:59 +10:00
c2b1f7ef25
Altered code generated by AutoAnalyser to generate absolute paths to jar and Matlab/Python utilities, so that it doesn't matter if the user moves the generated code to another location. Also added warning suppression in Matlab for attempting to add the jar to the path multiple times.
2017-08-30 12:06:02 +10:00
626293b84d
More docs for KSG mixed calc.
2017-08-30 01:19:54 +01:00
e11218631e
Added myself as author of KSG mixed calculator.
2017-08-29 23:56:28 +01:00
49afa343fc
Removed old variables and functions from KSG mixed, added docs.
2017-08-29 23:55:10 +01:00
bba00f07fc
In AutoAnalyser switching to store calculator as its actual class rather than superclass, since otherwise you can't access features like analytic surrogates without casting to the correct interface.
2017-08-29 15:08:50 +10:00
1f236dee49
Added AnalyticMeasurementDistribution to the generated Java headers for AutoAnalyser
2017-08-29 14:55:44 +10:00
b7154fab62
Patched issue where Analytic stat sig checkbox was still generating Empirical in the generated code (even though it was computing it properly)
2017-08-29 14:51:56 +10:00
5196c204a9
Fixed Matlab paths to only have one variable to change, and fixed Python spacing in AutoAnalyser
2017-08-28 13:31:38 +10:00
5dcb89bed7
Adding AutoAnalyser for Active information storage, including run scripts in demo folder
2017-08-28 09:45:05 +10:00
19f2c5abbc
Performance tweaks for TE Discrete, which should make a difference when the state space is large in comparison to the number of samples.
2017-08-28 00:36:24 +10:00
9f4ce02363
Added Conditional Transfer Entropy AutoAnalyser source code, and startup scripts.
2017-08-23 00:37:28 +10:00
jlizier