jlizier dfe7ef0334 Altering AIS Multivariate Via Mutual Info calculator -- and child classes, now including kernel estimator -- to support auto-embedding primarily via the parent methods of the univariate AIS calculator. ... Also includes patching functionality when dimension == 1 to always use the underlying AIS univariate calculator consistently, and adding missing methods on adding observations with validity array. Also includes some minor alterations to error messages. Gaussian and Kernel Multivariate AIS calculators have the computeAdditionalBiasToRemove() method implemented now to allow this; Gaussian calculator also adds the analytic computeSignificance() method, whilst Kernel calculator also adds a property for the number of surrogates to use in bias correction.		2018-05-16 22:42:32 +10:00
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ActiveInfoStorageCalculatorKernel.java	Minor changes to Javadocs for AIS kernel	2018-05-16 22:28:19 +10:00
ActiveInfoStorageCalculatorMultiVariateKernel.java	Altering AIS Multivariate Via Mutual Info calculator -- and child classes, now including kernel estimator -- to support auto-embedding primarily via the parent methods of the univariate AIS calculator.	2018-05-16 22:42:32 +10:00
EntropyCalculatorKernel.java	Adding computeLocalOfPreviousObservations() to continuous Entropy estimator interface and all underlying implementations. Added unit tests that locals should average back ok. Also fixing multivariate Entropy estimator interface to implement the univariate interface also (and fixing underlying implementations to comply)	2018-04-27 11:20:25 +10:00
EntropyCalculatorMultiVariateKernel.java	Adding computeLocalOfPreviousObservations() to continuous Entropy estimator interface and all underlying implementations. Added unit tests that locals should average back ok. Also fixing multivariate Entropy estimator interface to implement the univariate interface also (and fixing underlying implementations to comply)	2018-04-27 11:20:25 +10:00
KernelCount.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
KernelEstimatorMultiVariate.java	Corrects the access at one point to the bins for the data points in the multivariate kernel estimator, which should use an IntArray object but did use an int[] object to access . Fixes #69.	2018-05-10 20:20:02 +10:00
KernelEstimatorTransferEntropy.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
KernelEstimatorTransferEntropyMultiVariate.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
KernelEstimatorUniVariate.java	Altering kernel estimator classes so that the return values for getProbability are proper probability densities rather than probabilities (by now dividing by the kernel diameter/volume). This patches the EntropyCalculatorKernel and the EntropyCalculatorMultiVariateKernel to properly return differential entropy, as advertised. Makes no difference to the MI and TE kernel calculators, as they use counts anyway rather than probability densities.	2016-10-18 11:56:38 +11:00
MultiInfoCalculatorKernel.java	Making continuous MultiInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. For implementing classes, this means adding the missing methods.	2017-08-18 23:42:43 +10:00
MutualInfoCalculatorMultiVariateKernel.java	Fixed default value of dynamic exclusion window in Kernel MI calculator to be 0. Technically it is zero (because dynCorrExcl boolean is set to false, but gets reported as 100 because the integer value of dynCorrExclTime was not set to 0 itself)	2017-09-02 20:18:36 +10:00
PredictiveInfoCalculatorKernel.java	Fixes issue 34 -- adds predictive information calculators for continuous variables; interface definition, common code via abstract mutual information calculator, and implementations for Gaussian, kernel and KSG estimators.	2014-10-16 00:31:41 +00:00
TransferEntropyCalculatorKernel.java	Minor fixes to default values of TE calculator properties, and adding error messages for array file reading	2015-07-09 14:38:23 +00:00
TransferEntropyCalculatorKernelPlain.java	Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38	2015-06-04 04:27:23 +00:00
TransferEntropyCalculatorKernelPlainIterators.java	Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38	2015-06-04 04:27:23 +00:00
TransferEntropyCalculatorKernelSeparate.java	Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38	2015-06-04 04:27:23 +00:00
TransferEntropyCalculatorMultiVariateKernel.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
TransferEntropyCalculatorMultiVariateSingleObservationsKernel.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
TransferEntropyKernelCounts.java	Javadocs made release-ready in the continuous.kernel package. Also renamed any "epsilon" variables to "kernelWidth" in most classes.	2014-08-13 02:30:39 +00:00
package-info.java	Adding package-info.java files for Javadocs for the various packages	2014-08-13 15:36:10 +00:00