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gaussian
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Added to AutoAnalyser GUI for AIS surrogate-based bias correction (parameter being the number of surrogates) for max AIS corrected auto embedding, for kernel estimator as well as Gaussian (as an alternative to analytic). Also includes the implementing code for AIS Gaussian (was already committed for kernel)
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2018-08-27 14:24:05 +10:00 |
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kernel
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Altering AIS Multivariate Via Mutual Info calculator -- and child classes, now including kernel estimator -- to support auto-embedding primarily via the parent methods of the univariate AIS calculator.
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2018-05-16 22:42:32 +10:00 |
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kozachenko
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Adding computeLocalOfPreviousObservations() to continuous Entropy estimator interface and all underlying implementations. Added unit tests that locals should average back ok. Also fixing multivariate Entropy estimator interface to implement the univariate interface also (and fixing underlying implementations to comply)
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2018-04-27 11:20:25 +10:00 |
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kraskov
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Altering TE Kraskov to do auto-embedding properly when we have added multiple observations with validity vectors. Also taking the opportunity to re-engineer the internals to lay groundwork for auto-embedding function to be shared with the Gaussian estimator at a later stage. Unit tests added here as well for the above.
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2018-10-15 20:56:50 +11:00 |
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symbolic
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Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38
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2015-06-04 04:27:23 +00:00 |
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ActiveInfoStorageCalculator.java
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Added new interface InfoMeasureCalculatorContinuous to capture common methods for continuous calculators. Also adapted most continuous calculators to implement this, which involved in many cases removing duplicate definitions of these methods in the interfaces for these measures. For ConditionalMI calculator, this meant we needed to add an implementation of the zero-argument initialise() call also. Still need to do MultiInfo, PredictiveInfo and Entropy in future, as they're missing a few methods.
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2017-08-18 16:54:55 +10:00 |
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ActiveInfoStorageCalculatorMultiVariate.java
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Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.
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2017-08-18 15:31:27 +10:00 |
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ActiveInfoStorageCalculatorMultiVariateViaMutualInfo.java
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Adding check of dimensionality of observations supplied to multivariate AIS calculators when univariate is expected.
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2018-06-19 23:45:00 +10:00 |
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ActiveInfoStorageCalculatorViaMutualInfo.java
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Altering AIS Multivariate Via Mutual Info calculator -- and child classes, now including kernel estimator -- to support auto-embedding primarily via the parent methods of the univariate AIS calculator.
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2018-05-16 22:42:32 +10:00 |
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ChannelCalculator.java
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Minor corrections to Javadocs for the continuous package
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2014-08-13 15:20:00 +00:00 |
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ChannelCalculatorCommon.java
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Added new interface InfoMeasureCalculatorContinuous to capture common methods for continuous calculators. Also adapted most continuous calculators to implement this, which involved in many cases removing duplicate definitions of these methods in the interfaces for these measures. For ConditionalMI calculator, this meant we needed to add an implementation of the zero-argument initialise() call also. Still need to do MultiInfo, PredictiveInfo and Entropy in future, as they're missing a few methods.
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2017-08-18 16:54:55 +10:00 |
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ChannelCalculatorMultiVariate.java
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Added methods for computing MI/TE etc in Multivariate calculators on only univariate time series (double[]) when the calculators have been initialised for dimension 1 in source and destination
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2015-01-23 03:11:35 +00:00 |
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ConditionalMutualInfoCalculatorMultiVariate.java
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For Conditional MI calculators (sontinuous), adding setObservations and addObservations method signatures which take univariate arrays (only work if initialised dimensionalities are univariate) into the interface, and the common base class. This is in preparation for the CMI AutoAnalyser
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2017-08-22 21:26:44 +10:00 |
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ConditionalMutualInfoMultiVariateCommon.java
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In surrogates for MI and CMI also turning adding noise off since this will have been done in the initial calculation already, and will just broaden the noise here.
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2018-05-12 22:35:54 +10:00 |
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ConditionalTransferEntropyCalculator.java
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Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface
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2014-08-13 02:18:33 +00:00 |
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ConditionalTransferEntropyCalculatorViaCondMutualInfo.java
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Initialising conditional TE calculator to have one conditional dimension by default instead of none. Also fixing the way the conditional parameters are printed via getProperty() when they are null.
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2017-08-23 00:18:41 +10:00 |
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EntropyCalculator.java
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Adding computeLocalOfPreviousObservations() to continuous Entropy estimator interface and all underlying implementations. Added unit tests that locals should average back ok. Also fixing multivariate Entropy estimator interface to implement the univariate interface also (and fixing underlying implementations to comply)
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2018-04-27 11:20:25 +10:00 |
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EntropyCalculatorMultiVariate.java
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Adding computeLocalOfPreviousObservations() to continuous Entropy estimator interface and all underlying implementations. Added unit tests that locals should average back ok. Also fixing multivariate Entropy estimator interface to implement the univariate interface also (and fixing underlying implementations to comply)
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2018-04-27 11:20:25 +10:00 |
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InfoMeasureCalculatorContinuous.java
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Making continuous EntropyCalculator and EntropyCalculatorMultiVariate classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. Also added NUM_DIMENSIONS property to EntropyCalculatorMultiVariate interface, so that these calculators can have an initialise() method which takes no parameters. Fixed all implementing classes to have any methods that they were missing.
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2017-08-18 20:18:29 +10:00 |
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MultiInfoCalculator.java
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Making continuous MultiInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. For implementing classes, this means adding the missing methods.
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2017-08-18 23:42:43 +10:00 |
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MultiInfoCalculatorCommon.java
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Making continuous MultiInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. For implementing classes, this means adding the missing methods.
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2017-08-18 23:42:43 +10:00 |
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MutualInfoCalculatorMultiVariate.java
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Added interface ChannelCalculator for MutualInfoCalculatorMultiVariate; this should have always been there but not all calculators implemented the univariate methods. It previously only implemented ChannelCalculatorMultiVariate. Added those methods into MutualInfoMultiVariateCommon, which provides the base implementation for all required calculators, so all are now taken care of. This means MI and TE can both be fully used in one interface with the set/addObservations methods.
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2017-08-18 13:54:10 +10:00 |
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MutualInfoMultiVariateCommon.java
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Added addObservations() method with sourceValid and destValid boolean arrays to TransferEntropyCalculatorViacondMutualInfo class
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2018-09-21 10:34:01 +10:00 |
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PredictiveInfoCalculator.java
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Making continuous PredictiveInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. And fixed the common implementing class to have the missing getProperty method.
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2017-08-18 23:11:37 +10:00 |
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PredictiveInfoCalculatorViaMutualInfo.java
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Making continuous PredictiveInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. And fixed the common implementing class to have the missing getProperty method.
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2017-08-18 23:11:37 +10:00 |
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TransferEntropyCalculator.java
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Minor corrections to Javadocs for the continuous package
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2014-08-13 15:20:00 +00:00 |
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TransferEntropyCalculatorMultiVariate.java
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Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface
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2014-08-13 02:18:33 +00:00 |
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TransferEntropyCalculatorMultiVariateViaCondMutualInfo.java
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Altering TE Kraskov to do auto-embedding properly when we have added multiple observations with validity vectors. Also taking the opportunity to re-engineer the internals to lay groundwork for auto-embedding function to be shared with the Gaussian estimator at a later stage. Unit tests added here as well for the above.
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2018-10-15 20:56:50 +11:00 |
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TransferEntropyCalculatorViaCondMutualInfo.java
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Altering TE Kraskov to do auto-embedding properly when we have added multiple observations with validity vectors. Also taking the opportunity to re-engineer the internals to lay groundwork for auto-embedding function to be shared with the Gaussian estimator at a later stage. Unit tests added here as well for the above.
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2018-10-15 20:56:50 +11:00 |
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TransferEntropyCommon.java
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Minor fixes to default values of TE calculator properties, and adding error messages for array file reading
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2015-07-09 14:38:23 +00:00 |
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package-info.java
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Tweaks to javadocs
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2014-08-14 06:26:06 +00:00 |
