jlizier 3e64fd28bd Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.		2017-08-18 15:31:27 +10:00
..
gaussian	Adding new methods computePValueForGivenEstimate() and computeEstimateForGivenPValue to AnalyticMeasurementDistribution and implementing in ChiSquareMeasurementDistribution. Involves importing (and refactoring) a significantly larger chunk of commons.maths3 classes (and updating existing ones to latest 3.6.1 version for consistency). Also addresses issue #23 in changing the actual value of the ChiSquareMeasurementDistribution to be that of the information theoretic measurement rather than 2*N times it (which was the value that is actually chi squared distributed), which also necessitates changes to the Discrete and Gaussian calculators computeSignificance() methods.	2017-06-14 11:09:01 +10:00
kernel	Merge remote-tracking branch 'ghub/master'. This merges Joe's v1.3.1 master into Pedro's master.	2017-05-24 20:24:32 +10:00
kozachenko	Adding package-info.java files for Javadocs for the various packages	2014-08-13 15:36:10 +00:00
kraskov	Merge branch 'master' of github.com:jlizier/jidt	2017-06-13 12:08:54 +10:00
symbolic	Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38	2015-06-04 04:27:23 +00:00
ActiveInfoStorageCalculator.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ActiveInfoStorageCalculatorMultiVariate.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ActiveInfoStorageCalculatorMultiVariateViaMutualInfo.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ActiveInfoStorageCalculatorViaMutualInfo.java	Enabled Active Info Storage calculators (continuous) to have addObservations() methods with validity supplied	2016-10-18 00:11:33 +11:00
ChannelCalculator.java	Minor corrections to Javadocs for the continuous package	2014-08-13 15:20:00 +00:00
ChannelCalculatorCommon.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ChannelCalculatorMultiVariate.java	Added methods for computing MI/TE etc in Multivariate calculators on only univariate time series (double[]) when the calculators have been initialised for dimension 1 in source and destination	2015-01-23 03:11:35 +00:00
ConditionalMutualInfoCalculatorMultiVariate.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ConditionalMutualInfoMultiVariateCommon.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
ConditionalTransferEntropyCalculator.java	Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface	2014-08-13 02:18:33 +00:00
ConditionalTransferEntropyCalculatorViaCondMutualInfo.java	Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38	2015-06-04 04:27:23 +00:00
EntropyCalculator.java	Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface	2014-08-13 02:18:33 +00:00
EntropyCalculatorMultiVariate.java	Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface	2014-08-13 02:18:33 +00:00
MultiInfoCalculator.java	Additional operations added to multi-info interface for continuous data, and pulled common operations into a common class (revamped Kernel calculator rewritten to use this)	2014-10-30 04:18:04 +00:00
MultiInfoCalculatorCommon.java	Additional operations added to multi-info interface for continuous data, and pulled common operations into a common class (revamped Kernel calculator rewritten to use this)	2014-10-30 04:18:04 +00:00
MutualInfoCalculatorMultiVariate.java	Added interface ChannelCalculator for MutualInfoCalculatorMultiVariate; this should have always been there but not all calculators implemented the univariate methods. It previously only implemented ChannelCalculatorMultiVariate. Added those methods into MutualInfoMultiVariateCommon, which provides the base implementation for all required calculators, so all are now taken care of. This means MI and TE can both be fully used in one interface with the set/addObservations methods.	2017-08-18 13:54:10 +10:00
MutualInfoMultiVariateCommon.java	Added interface ChannelCalculator for MutualInfoCalculatorMultiVariate; this should have always been there but not all calculators implemented the univariate methods. It previously only implemented ChannelCalculatorMultiVariate. Added those methods into MutualInfoMultiVariateCommon, which provides the base implementation for all required calculators, so all are now taken care of. This means MI and TE can both be fully used in one interface with the set/addObservations methods.	2017-08-18 13:54:10 +10:00
PredictiveInfoCalculator.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
PredictiveInfoCalculatorViaMutualInfo.java	Altering various continuous calculators to implement the EmpiricalNullDistributionComputer interface (where they're already implementing computeSignificance() etc.). Also altered the EmpiricalNullDistributionComputer methods to throw Exceptions, since the continuous calculators generally do this (and doesn't harm the discrete ones). Also involved implementing the methods in ConditionalMIMultiVariateCommon by selecting to permute the first variable by default.	2017-08-18 15:31:27 +10:00
TransferEntropyCalculator.java	Minor corrections to Javadocs for the continuous package	2014-08-13 15:20:00 +00:00
TransferEntropyCalculatorMultiVariate.java	Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface	2014-08-13 02:18:33 +00:00
TransferEntropyCalculatorMultiVariateViaCondMutualInfo.java	Merge remote-tracking branch 'ghub/master'. This merges Joe's v1.3.1 master into Pedro's master.	2017-05-24 20:24:32 +10:00
TransferEntropyCalculatorViaCondMutualInfo.java	Added method getSeparateNumObservations() to return a list of how many samples were pulled from each addObservations call, to make reconstructing/separating local values easier subsequently	2016-10-18 00:00:31 +11:00
TransferEntropyCommon.java	Minor fixes to default values of TE calculator properties, and adding error messages for array file reading	2015-07-09 14:38:23 +00:00
package-info.java	Tweaks to javadocs	2014-08-14 06:26:06 +00:00