natas_hw
/
jidt
mirror of https://github.com/jlizier/jidt
0
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
jidt/java/source/infodynamics/measures/continuous
History
Joseph Lizier 2ab3ec347c Adding method for KSG TE estimator to return KNN distances 2025-04-01 22:49:45 +11:00
..
gaussian Gathering common functionality of EntropyMultiVariate estimators into a Common class. Adds some new functionality (e.g. addObservations() for Gaussian and Kernel) 2024-04-20 17:57:38 +10:00
kernel Gathering common functionality of EntropyMultiVariate estimators into a Common class. Adds some new functionality (e.g. addObservations() for Gaussian and Kernel) 2024-04-20 17:57:38 +10:00
kozachenko Gathering common functionality of EntropyMultiVariate estimators into a Common class. Adds some new functionality (e.g. addObservations() for Gaussian and Kernel) 2024-04-20 17:57:38 +10:00
kraskov Adding method for KSG TE estimator to return KNN distances 2025-04-01 22:49:45 +11:00
symbolic Adding getProperty() method to all conditional MI calculators and TE calculators (except for multivariate versions at this stage), in readiness for automated embedding being added to TE Kraskov to partially fix Issue 38 2015-06-04 04:27:23 +00:00
ActiveInfoStorageCalculator.java Added proper full definitions for the methods of the AIS multivariate interface; much of this is achieved by extending the univariate AIS interface (which mandates that the univariate methods must be supported). No current child classes required any changes as they all supported these already. Removed superfluous documentation in the AIS multivariate via MI class (as well as fixing whitespace inconsistencies therein) 2018-10-17 23:37:43 +11:00
ActiveInfoStorageCalculatorMultiVariate.java Adding property of number of dimensions for the AIS multivariate calculator (and implemented in the via MI common class). Needed this to make multivariate TE embedding a bit neater, and it should be there anyway. 2018-10-18 00:51:37 +11:00
ActiveInfoStorageCalculatorMultiVariateViaMutualInfo.java Adding property of number of dimensions for the AIS multivariate calculator (and implemented in the via MI common class). Needed this to make multivariate TE embedding a bit neater, and it should be there anyway. 2018-10-18 00:51:37 +11:00
ActiveInfoStorageCalculatorViaMutualInfo.java AIS and TE estimators (for KSG in particular) utilising the underlying NN Searchers holding the different data sets separately. 2023-10-09 13:16:27 +11:00
ChannelCalculator.java Minor corrections to Javadocs for the continuous package 2014-08-13 15:20:00 +00:00
ChannelCalculatorCommon.java Added new interface InfoMeasureCalculatorContinuous to capture common methods for continuous calculators. Also adapted most continuous calculators to implement this, which involved in many cases removing duplicate definitions of these methods in the interfaces for these measures. For ConditionalMI calculator, this meant we needed to add an implementation of the zero-argument initialise() call also. Still need to do MultiInfo, PredictiveInfo and Entropy in future, as they're missing a few methods. 2017-08-18 16:54:55 +10:00
ChannelCalculatorMultiVariate.java Adding overloads on setObservations and addObservations for MI and TE calculators to handle one variable univariate and one variable multivariate 2021-11-15 10:58:59 +11:00
ConditionalMutualInfoCalculatorMultiVariate.java Adding univariate calls for cross CMI 2025-04-01 22:33:02 +11:00
ConditionalMutualInfoMultiVariateCommon.java Adding univariate calls for cross CMI 2025-04-01 22:33:02 +11:00
ConditionalTransferEntropyCalculator.java Adds addObservations calls with validity arrays for conditional transfer entropy 2020-05-15 17:34:00 +10:00
ConditionalTransferEntropyCalculatorViaCondMutualInfo.java Adding non-overloaded method signatures for multivariate arrays, so that the jpype python-java bridge can resolve which method signature to use more directly via these 2020-05-22 14:42:26 +10:00
EntropyCalculator.java Gathering common functionality of EntropyMultiVariate estimators into a Common class. Adds some new functionality (e.g. addObservations() for Gaussian and Kernel) 2024-04-20 17:57:38 +10:00
EntropyCalculatorMultiVariate.java Adding property to set random seed for noise addition to EntropyMultiVariate estimators (mimicing that for MI/CMI estimators), extending the fix for issue #99 to Entropy estimators 2024-04-20 18:52:10 +10:00
EntropyCalculatorMultiVariateCommon.java Adding property to set random seed for noise addition to EntropyMultiVariate estimators (mimicing that for MI/CMI estimators), extending the fix for issue #99 to Entropy estimators 2024-04-20 18:52:10 +10:00
InfoMeasureCalculatorContinuous.java Making continuous EntropyCalculator and EntropyCalculatorMultiVariate classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. Also added NUM_DIMENSIONS property to EntropyCalculatorMultiVariate interface, so that these calculators can have an initialise() method which takes no parameters. Fixed all implementing classes to have any methods that they were missing. 2017-08-18 20:18:29 +10:00
MultiInfoCalculator.java Making continuous MultiInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. For implementing classes, this means adding the missing methods. 2017-08-18 23:42:43 +10:00
MultiInfoCalculatorCommon.java fixing addedMoreThanOneObservationSet for the MultiInfoCalculator 2020-05-15 17:35:54 +10:00
MultiVariateInfoMeasureCalculatorCommon.java Added abstract parent class for multivariate IT measures on continuous data. 2021-01-24 21:56:26 +00:00
MutualInfoCalculatorMultiVariate.java Adding property to allow used to set random seed for noise addition to data in MI, CMI and wrapped estimators. Closes issue #99 2024-04-16 14:08:04 +10:00
MutualInfoMultiVariateCommon.java Adding univariate calls for KNN distances in KSG MI estimators 2025-04-01 22:33:45 +11:00
PredictiveInfoCalculator.java Making continuous PredictiveInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. And fixed the common implementing class to have the missing getProperty method. 2017-08-18 23:11:37 +10:00
PredictiveInfoCalculatorViaMutualInfo.java Making continuous PredictiveInfoCalculator classes implement the InfoMeasureCalculatorContinuous interface. For the interfaces, this means removing methods where duplicated. And fixed the common implementing class to have the missing getProperty method. 2017-08-18 23:11:37 +10:00
TransferEntropyCalculator.java Minor corrections to Javadocs for the continuous package 2014-08-13 15:20:00 +00:00
TransferEntropyCalculatorMultiVariate.java Javadocs made release-ready in the continuous package. Also added computeLocalUsingPreviousObservations into ChannelCalculator and ChannelCalculatorMultiVariate (removed from MutualInfoMultivarate), and made the ViaCondMutualInfo classes not be abstract anymore, and moved embedding properties up into the main TransferEntropyCalculator interface 2014-08-13 02:18:33 +00:00
TransferEntropyCalculatorMultiVariateViaCondMutualInfo.java Adding overloads on setObservations and addObservations for MI and TE calculators to handle one variable univariate and one variable multivariate 2021-11-15 10:58:59 +11:00
TransferEntropyCalculatorViaCondMutualInfo.java AIS and TE estimators (for KSG in particular) utilising the underlying NN Searchers holding the different data sets separately. 2023-10-09 13:16:27 +11:00
TransferEntropyCommon.java Minor fixes to default values of TE calculator properties, and adding error messages for array file reading 2015-07-09 14:38:23 +00:00
package-info.java Tweaks to javadocs 2014-08-14 06:26:06 +00:00