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45 Commits

Author SHA1 Message Date
Pedro Martinez Mediano 6af0e22030 Merge branch 'master' into gpu 2017-05-25 02:44:59 +10:00
jlizier 4e54fc6ce4 Updated full embedding and delay parameters for Discrete TE calculator in the AutoAnalyser demo 2017-04-13 10:03:15 +10:00
jlizier f840f0ec72 Added statistical significance test (and analytic option where available) to the AutoAnalyser demo. Required also updating how python generated code handles input data, and updating readIntsFile and readFlotsFile utilities, so AutoAnalyser worked with Python3. Also updated the GUI of AutoAnalyser to have a little more room for status messages (required for statistical significance. 2017-04-10 20:29:00 +10:00
jlizier 37954f6158 Updated AutoAnalyser to provide "all pairs" choice (to compute the pairwise measure between all available pairs of columns in the data), and also make computing optional (with code generation still always taking place) 2017-04-06 13:39:55 +10:00
jlizier fbe95040f6 Updating PDFs of all demos before making new release 2016-10-21 00:13:26 +11:00
jlizier e0fb7de856 Added auto-embedding method for AIS and TE Kraskov (KSG) calculators which maximises the bias-corrected AIS. This commit includes the AIS and TE calculators themselves, an update to the TE auto analyser (with comments on the auto embed method property) 2016-10-18 12:52:31 +11:00
Pedro Martínez Mediano 5074c1b6f7 Initial commit of GPU code. 2016-03-13 01:15:19 +00:00
joseph.lizier adafad05a2 Updating tutorial slides as for ECAL, plus some minor updates to some figures and PDFs found while developing tutorial 2015-07-19 17:17:26 +00:00
joseph.lizier f23b0c6abb Adding MI Auto Analyser GUI, plus minor bug corrections to TE Auto Analyser GUI 2015-07-12 19:54:14 +00:00
joseph.lizier 6f8050d466 Making AutoAnalyser an abstract class with AutoAnalyserTE a child; this builds platform to allow an AutoAnalyserMI later 2015-07-09 14:43:47 +00:00
joseph.lizier 3f3c737ddd Updating PDFs of Demos for next release. Also updated Schreiber TE demo to add section about auto-embedding. And updated release notes and svn number in build file. 2015-07-07 14:51:04 +00:00
joseph.lizier 2974916948 Extended AutoAnalyser GUI demo to work with discrete TE calculator as well. Also added a sample discrete data set 2015-07-03 13:01:38 +00:00
joseph.lizier 745aa5f20f Finalising move of AutoAnalyser up to the top of demos level, including changing paths in the java file for the demo 2015-07-01 14:28:12 +00:00
joseph.lizier f4c5591cd2 Moving files to the new AutoAnalyser demo location 2015-07-01 14:06:16 +00:00
joseph.lizier 75fca70768 Gold plating the AutoAnalyser demo to have comments in generated code, JIDT image, tool tip text for properties, etc. 2015-07-01 13:46:31 +00:00
joseph.lizier 3d4765ea6b Matlab and Python code generation added to the AutoAnalyser GUI 2015-06-29 06:49:43 +00:00
joseph.lizier 53a3cf129d First full working version of the TE Auto Analyser, including scripts to run auto generated Java code 2015-06-29 04:57:38 +00:00
joseph.lizier 6951f52f68 First version of TE Auto Analyser Java Swing GUI 2015-06-23 00:58:57 +00:00
joseph.lizier 2928dafa12 Adding new Java demo 9 for auto-embedding of Kraskov TE 2015-06-05 14:48:03 +00:00
joseph.lizier 0f5bf692ac Adding PDFs of Wiki pages on using JIDT in non-Java environments, ready to be distributed. 2015-05-29 03:28:17 +00:00
joseph.lizier 379f4496f0 Adding Schreiber TE example for Python, with Kraskov estimator, mirroring the main demo here in Matlab/Octave 2015-02-03 11:13:56 +00:00
joseph.lizier 9c37420d69 Updated build.xml, readme and demo PDFs for new version release 1.2 2015-01-28 05:44:59 +00:00
joseph.lizier 5434796cd8 Added Java code to mirror the Matlab/Octave calculation of KSG transfer entropy for heart-breath rate demo 2015-01-28 04:59:28 +00:00
joseph.lizier 2c4e8cca04 Extending Java Simple Demo 6 to compute MI on univariate time series as well as multivariate. 2015-01-23 03:12:36 +00:00
joseph.lizier 2a36ac0387 Updating PDFs of demos and paper, release notes and release numbering ready for v1.1 release. 2014-11-13 23:35:47 +00:00
joseph.lizier 02c22fcd23 Windows Batch files added to run each of the Simple Java Demos 2014-10-06 13:09:47 +00:00
joseph.lizier 643d76fe19 Adding R example 5 and 6, adding notices to jar dist, finalising python example 6 using file reading utilities; adding extra printout to Example 4 in Java 2014-08-22 05:01:12 +00:00
joseph.lizier 091d66a4f9 Appending suffix "Discrete" to all discrete calculators. Step 5 -- refactoring within demos, and updating PDFs for demos 2014-08-14 04:02:51 +00:00
joseph.lizier 8efe295a62 Adding readme files for all the demos for which we have not yet done so 2014-08-07 01:26:29 +00:00
joseph.lizier 96118c459c Adding Interregional Transfer Demo code, data and readme file 2014-08-07 01:25:50 +00:00
joseph.lizier e6242a544c Adding GPLv3 license statement to all code headers in the demos; also adding readme for use of octave-java code; correcting references to papers from CA code 2014-08-06 06:52:59 +00:00
joseph.lizier b7526a798a Refactoring Simple Java Demos for discrete TE calculator to take source as first argument before destination (to match continuous calculators) 2014-08-05 12:50:24 +00:00
joseph.lizier 515fdd1432 Renaming (Apparent) TE discrete calculator in Simple Java Demos 2014-08-05 05:05:40 +00:00
joseph.lizier 2d48195ce6 Adding examples 7 and 8 to Java Simple Demos (for ensemble approach, and binning data), plus adding bias estimation to example 3 and local TE to example 4 2014-08-01 03:32:16 +00:00
joseph.lizier baf66c713a Added script to reproduce results from the GSO 2013 book chapter on CA results. Several updates to CA scripts associated with this are also uploaded, including ability to save PDF images, nonlinear colour scaling, and alignment of image plot with cell boundaries 2013-08-15 06:59:13 +00:00
joseph.lizier 34c9d31018 Renaming lateBindingMutualInfo to example6LateBindingMutualInfo (4) - completing internal name changes and comments 2013-06-18 12:08:06 +00:00
joseph.lizier 1656ba8730 Renaming lateBindingMutualInfo to example6LateBindingMutualInfo (3) 2013-06-18 11:57:58 +00:00
joseph.lizier f6f41afdba Renaming lateBindingMutualInfo to example6LateBindingMutualInfo (2 - 1 more to come ...) 2013-06-18 11:57:21 +00:00
joseph.lizier b9aa85055d Renaming lateBindingMutualInfo to example6LateBindingMutualInfo 2013-06-18 11:55:52 +00:00
joseph.lizier 6554180b98 Adding Java simple demo 5 2013-06-18 11:28:06 +00:00
joseph.lizier f0dee75f18 Added Java example 4 2013-06-18 06:32:46 +00:00
joseph.lizier bc677030da Adding Java simple demo 3 and shell script to run it 2013-06-14 08:02:10 +00:00
joseph.lizier 06fa1567ab Adding Java demo examples 1 and 2 2013-06-12 00:33:09 +00:00
joseph.lizier 15af54e395 Minor updates 2013-04-26 04:21:32 +00:00
joseph.lizier dcb15ead1d Added new demos regarding dynamic binding of implementations to abstract calculator objects (in java and matlab) 2013-03-04 06:09:26 +00:00