914dc171f5
fix bugs where shuffle and rotate strategy where switched
...
Also fixed rotate surrogate selection, list was being rotate continuously rather than rotating the initial index list, which nullified the dyncorrexcl setting.
2024-05-18 14:24:22 +10:00
6bf7954d4e
modify generateRotatedSurrogates for theiler window exclusion
2024-04-28 14:23:48 +10:00
191a81f1bc
add generateRotatedSurrogates method in RandomGenerator
2024-04-20 11:09:22 +10:00
b68d77e18e
Rudimentary Javadocs completed for the utils package
2014-08-13 15:18:47 +00:00
4a3532b25b
Adding GPLv3 license statement to all code headers in the infodymamics.measures.mixed, utils and networkinference packages.
2014-08-06 06:31:24 +00:00
2b8ab0e939
Adding error check to constructor of discrete MI calculator;
...
and making method of generating random permutations more efficient (using native library).
2013-10-22 04:08:21 +00:00
b4645584fe
Added new method generateRandomPerturbations(int, int) to RandomGenerator, and switched all computeSignificance methods to use this (since there's no need for checking for distinct perturbations really, and this is much faster). Required adding sortIndices(double[]) method to MatrixUtils
2013-10-18 00:42:12 +00:00
524b277b54
Adding minor utility functions
2013-06-18 07:31:18 +00:00
b17ba9b05c
Minor alterations to utilities, including adding exceptions and adding to-do notes.
2013-03-18 05:55:43 +00:00
29f183e91d
Altered RandomGenerator.generateDistinctRandomInts() to return int[] instead of double[].
...
Added comments in CompleteTransferEntropyCalculator to clarify the meaning of offsets from other sources.
Added comments regarding entropy calculator
2012-12-03 05:04:00 +00:00
07ce2d0e24
Added determinant computation via Cholesky decomposition for symmetric matrices (more efficient)
...
Utilising determinant computation via Cholesky decomposition in Gaussian entropy and MI calculators
Allowed ChannelCalculatorCommon.finaliseObservations() to throw Exceptions so that child classes can do so (in particular Gaussian MI needs to do so if it finds the variables are linearly dependent)
2012-08-17 07:28:50 +00:00
56d868ca00
Uploading whole of Java Information Dynamics toolkit for the first time.
2012-05-08 00:18:37 +00:00
Donovan Rynne