Commit Graph

9 Commits

Author SHA1 Message Date
joseph.lizier b68d77e18e Rudimentary Javadocs completed for the utils package 2014-08-13 15:18:47 +00:00
joseph.lizier 4a3532b25b Adding GPLv3 license statement to all code headers in the infodymamics.measures.mixed, utils and networkinference packages. 2014-08-06 06:31:24 +00:00
joseph.lizier 2b8ab0e939 Adding error check to constructor of discrete MI calculator;
and making method of generating random permutations more efficient (using native library).
2013-10-22 04:08:21 +00:00
joseph.lizier b4645584fe Added new method generateRandomPerturbations(int, int) to RandomGenerator, and switched all computeSignificance methods to use this (since there's no need for checking for distinct perturbations really, and this is much faster). Required adding sortIndices(double[]) method to MatrixUtils 2013-10-18 00:42:12 +00:00
joseph.lizier 524b277b54 Adding minor utility functions 2013-06-18 07:31:18 +00:00
joseph.lizier b17ba9b05c Minor alterations to utilities, including adding exceptions and adding to-do notes. 2013-03-18 05:55:43 +00:00
joseph.lizier 29f183e91d Altered RandomGenerator.generateDistinctRandomInts() to return int[] instead of double[].
Added comments in CompleteTransferEntropyCalculator to clarify the meaning of offsets from other sources.
Added comments regarding entropy calculator
2012-12-03 05:04:00 +00:00
joseph.lizier 07ce2d0e24 Added determinant computation via Cholesky decomposition for symmetric matrices (more efficient)
Utilising determinant computation via Cholesky decomposition in Gaussian entropy and MI calculators

Allowed ChannelCalculatorCommon.finaliseObservations() to throw Exceptions so that child classes can do so (in particular Gaussian MI needs to do so if it finds the variables are linearly dependent)
2012-08-17 07:28:50 +00:00
joseph.lizier 56d868ca00 Uploading whole of Java Information Dynamics toolkit for the first time. 2012-05-08 00:18:37 +00:00