Joseph Lizier
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1dc2dc8b86
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Updating all discrete calculators (except SeparableInfo, since it's outmoded) to have a default empty constructor, with an overloaded initialise method added that provides all relevant properties. Fixes #77, and provides a first step for #66. Also aligned PredictiveInfo and ConditionalTE calculators to use the appropriate super classes.
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2019-07-25 14:29:51 +10:00 |
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jlizier
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af1173ba5b
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Patching local MI discrete computation when we have a time difference of > 0 (we were getting an ArrayIndexOutOfBoundsException before)
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2018-09-05 13:43:21 +10:00 |
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jlizier
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dc08e1c372
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Catching OutOfMemoryError in Discrete calculator creation for all other discrete calculators (only MI was done in the previous commit). Also simplified constructor calls (with code re-use) for conditional TE.
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2018-08-25 22:27:29 +10:00 |
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jlizier
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93c767999e
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Catching OutOfMemoryError in Discrete MI calculator creation
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2018-08-25 20:59:05 +10:00 |
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jlizier
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7fafabe451
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Extending MI discrete calculator to allow different bases for each variable. This necessitates immediate removal of the (int,int) constructor (where the 2nd argument was the time difference), this will now be confusing between (base, timeDiff) and (base1, base2). In time we may bring it back, after we can be reasonably comfortable people have switched away from using (base, timeDiff).
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2018-06-20 10:55:21 +10:00 |
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jlizier
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04351498aa
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Changed my mind and pulled EmpiricalNullDistributionComputer in as being extended/implemented by ChannelCalculatorDiscrete. (This does make sense, since "extend" for an interface really means implements, it's not so much a child class). This necessitated removing the interface from explicitly being named in the definitions of the discrete MI and TE calculators since it's there implicitly.
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2017-08-18 15:40:00 +10:00 |
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jlizier
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d9e43d966a
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Added implementation of EmpiricalNullDistributionComputer to various discrete calculators which implement computeSignificance() etc. Also involved removing the method from ChannelCalculatorDiscrete, as there's no way of having it (an interface) specify implementing an interface without extending it which I didn't think was completely logical. So ChannelCalculators can always be checked against implementing EmpiricalNullDistributionComputer if one wants to use computeSignificance with them. This also required adding the computeSignificance(int[][]) method to ConditionalTECalculatorDiscrete and TECalculatorDiscrete
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2017-08-18 13:58:38 +10:00 |
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jlizier
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bd94172d60
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Removed setting the miComputed flag to true in a computeLocal method, since this could be called with new observations.
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2017-06-16 13:38:45 +10:00 |
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jlizier
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ea40f48bbc
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Adding new methods computePValueForGivenEstimate() and computeEstimateForGivenPValue to AnalyticMeasurementDistribution and implementing in ChiSquareMeasurementDistribution. Involves importing (and refactoring) a significantly larger chunk of commons.maths3 classes (and updating existing ones to latest 3.6.1 version for consistency). Also addresses issue #23 in changing the actual value of the ChiSquareMeasurementDistribution to be that of the information theoretic measurement rather than 2*N times it (which was the value that is actually chi squared distributed), which also necessitates changes to the Discrete and Gaussian calculators computeSignificance() methods.
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2017-06-14 11:09:01 +10:00 |
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joseph.lizier
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f2c5ba4771
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Appending suffix "Discrete" to all discrete calculators. Step 2 -- refactoring java files, which has flow on effects to other java files. All fixed here.
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2014-08-14 03:00:15 +00:00 |
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joseph.lizier
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752b2fdb23
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Appending suffix "Discrete" to all discrete calculators. Step 1 -- just changing file names
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2014-08-14 02:43:31 +00:00 |