natas_hw
/
jidt
mirror of https://github.com/jlizier/jidt
0
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
934 Commits 5 Branches 6 Tags 65 MiB
Commit Graph

30 Commits

Author SHA1 Message Date
Pedro Martinez Mediano b0fc309d6a Add overloadings for 1d continuous variables in KSG mixed calc. 2018-01-12 22:22:46 +00:00
Pedro Martinez Mediano ecda70f8e9 Hard-setting dynCorrExclTime to 0 in KSG mixed calc. 
Previous implementation was incomplete due to a mismatch between the
sample indices in the full and marginal KdTrees. Some code has been left
to guide future development.
 2017-11-20 14:47:00 +00:00
Pedro Martinez Mediano 25df49fa5a KSG mixed calc now allocates memory for locals only if requested. 2017-11-20 14:26:25 +00:00
Pedro Martinez Mediano 8f169171e1 Fixed small bug in KSG mixed calc surrogates. 
Surrogate calculator was applying timeDiff twice, so surrogate
dataset had abs(timeDiff) less observations than it should.
 2017-11-20 14:14:49 +00:00
Pedro Martinez Mediano d40024e1cd Allow negative timeDiff in KSG mixed calc. 2017-11-20 14:02:00 +00:00
Pedro Martinez Mediano f56ac6e69e Fix bug with Theiler window in KSG mixed calc. 2017-08-30 13:30:30 +01:00
Pedro Martinez Mediano 5961fb6246 Add Theiler window and jitter to KSG mixed calc. 2017-08-30 12:17:02 +01:00
Pedro Martinez Mediano 626293b84d More docs for KSG mixed calc. 2017-08-30 01:19:54 +01:00
Pedro Martinez Mediano e11218631e Added myself as author of KSG mixed calculator. 2017-08-29 23:56:28 +01:00
Pedro Martinez Mediano 49afa343fc Removed old variables and functions from KSG mixed, added docs. 2017-08-29 23:55:10 +01:00
Pedro Martinez Mediano bfe8156584 Add KDTrees to computeLocalUsingObservations in KSG mixed calc. 2017-08-16 19:28:24 +01:00
Pedro Martinez Mediano 641d17ec24 Fix bug with normalisation in KSG mixed and change unittest accordingly. 2017-08-16 19:18:51 +01:00
Pedro Martinez Mediano 7635cf8689 Added computeLocalOfPreviousObservations to KSG mixed. 
It follows the same pattern as the continuous MI: there is a
computeFromObservations method that returns either locals or average
based on a flag.
 2017-08-16 14:52:54 +01:00
Pedro Martinez Mediano 2d42e6ebad Removed unused function from KSG mixed. 2017-08-16 14:39:53 +01:00
Pedro Martinez Mediano 23bb573bb1 Replace computeSignificance method in KSG mixed with new one based on clone(). 2017-08-16 14:33:47 +01:00
Pedro Martinez Mediano 8251bdc1cb Removed unused variables from KSG mixed. 2017-08-16 13:35:03 +01:00
Pedro Martinez Mediano f55a7bd961 Add KdTrees to main compute() method in KSG mixed. 2017-08-16 13:31:18 +01:00
Pedro Martinez Mediano bad50ce663 KSG mixed now ignores batches of data shorter than timeDiff. 2017-08-16 13:27:05 +01:00
Pedro Martinez Mediano b5d2b7e367 KSG mixed now throws error if discrete data is out of range. 2017-08-16 13:25:44 +01:00
Pedro Martinez Mediano 437e606233 getNumObservations in KSG mixed now returns totalObservations. 
Before it returned continuousData.length, which more more prone
to null pointer errors, and therefore riskier.
 2017-08-16 00:07:51 +01:00
Pedro Martinez Mediano 39ad14d855 Added function to set timeDiff property. 2017-08-15 21:41:52 +01:00
Pedro Martinez Mediano abeb15cd6e Added standard start/finaliseAddObservations to mixed KSG calc. 2017-08-15 21:25:03 +01:00
Pedro Martinez Mediano 26137d12b1 Added precomputed digammas in KSG mixed calculator, fixed bug in locals. 2017-08-15 20:46:07 +01:00
jlizier 7d28e93913 Bug fix in mixed Kraskov implementation for computeUsingPreviousObservations (picked up by Rose Wang). Also acknowledged that this implementation is (mostly) as per Ross 2014. 2016-10-18 00:18:37 +11:00
joseph.lizier dbd1dcdd54 Fixing the bias correction on our experimental discrete-continuous KSG calculators 2015-07-19 17:19:59 +00:00
joseph.lizier b916ac08e8 Javadocs noted as incomplete, and indeed the code itself experimental, for mixed package. 2014-08-13 14:53:57 +00:00
joseph.lizier 0e598bf81e In mixed.kraskov estimators switched to use 4 nearest neighbours by default (as recommended by Kraskov et al.), and Kraskov2 algorithm for conditional MI fixed to match Wibral et al. equation (as per the continuous calculator) 2014-08-13 02:57:54 +00:00
joseph.lizier 4a3532b25b Adding GPLv3 license statement to all code headers in the infodymamics.measures.mixed, utils and networkinference packages. 2014-08-06 06:31:24 +00:00
joseph.lizier 5a6fdb0ea7 Code edits to mixed calculators to fix compilation after moving them into the "mixed" package. Also needed to make some alternations to some of the continuous calculators to fix usage of protected members which are no longer accessible to the moved classes. 2014-04-17 11:10:58 +00:00
joseph.lizier 73ec340f44 Finalised moving mixed calculators into the new mixed directory. 2014-04-17 06:53:27 +00:00