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Cleaning up code of the spiking TE estimator

This commit is contained in:
Joseph Lizier 2025-04-01 15:29:20 +11:00
parent 283dcb3b94
commit 13251a0104
1 changed files with 1 additions and 6 deletions
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7
java/source/infodynamics/measures/spiking/integration/TransferEntropyCalculatorSpikingIntegration.java
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@ -1,7 +1,6 @@
package infodynamics.measures.spiking.integration;
import java.util.Arrays;
import java.util.Collections;
import java.util.Iterator;
import java.util.PriorityQueue;
import java.util.Random;
@ -16,8 +15,6 @@ import infodynamics.utils.KdTree;
import infodynamics.utils.MathsUtils;
import infodynamics.utils.MatrixUtils;
import infodynamics.utils.NeighbourNodeData;
import infodynamics.utils.FirstIndexComparatorDouble;
import infodynamics.utils.UnivariateNearestNeighbourSearcher;
import infodynamics.utils.EuclideanUtils;
import infodynamics.utils.ParsedProperties;
@ -403,7 +400,6 @@ public class TransferEntropyCalculatorSpikingIntegration implements TransferEntr
if (vectorOfConditionalSpikeTimes.size() > 0) {
conditionalIterator = vectorOfConditionalSpikeTimes.iterator();
}
int timeSeriesIndex = 0;
for (double[] destSpikeTimes : vectorOfDestinationSpikeTimes) {
double[] sourceSpikeTimes = sourceIterator.next();
double[][] conditionalSpikeTimes = null;
@ -900,7 +896,6 @@ public class TransferEntropyCalculatorSpikingIntegration implements TransferEntr
if (vectorOfConditionalSpikeTimes.size() > 0) {
conditionalIterator = vectorOfConditionalSpikeTimes.iterator();
}
int timeSeriesIndex = 0;
for (double[] destSpikeTimes : vectorOfDestinationSpikeTimes) {
double[] sourceSpikeTimes = sourceIterator.next();
double[][] conditionalSpikeTimes = null;
@ -928,7 +923,7 @@ public class TransferEntropyCalculatorSpikingIntegration implements TransferEntr
KdTree resampledKdTreeConditioningAtSamples = new KdTree(arrayedResampledConditioningEmbeddingsFromSamples);
resampledKdTreeConditioningAtSamples.setNormType(normType);
Vector<double[]> conditionallyPermutedJointEmbeddingsFromSpikes = new Vector(jointEmbeddingsFromSpikes);
Vector<double[]> conditionallyPermutedJointEmbeddingsFromSpikes = new Vector<double[]>(jointEmbeddingsFromSpikes);
Vector<Integer> usedIndices = new Vector<Integer>();
for (int i = 0; i < conditionallyPermutedJointEmbeddingsFromSpikes.size(); i++) {